Categories: systems biology, transcriptomics -
Software type(s): GUI, website -
tool
MARA models genome-wide expression data in terms of our genome-wide annotations of regulatory sites. For a given expression data-set it infers the key transcription regulators, their sample-dependent activities, and their genome-wide targets.
keywords:
Affymetrix chip analysis,
animal,
arthropod,
Bayesian network,
ChIP-seq,
eukaryotic promoter,
expression,
expression data,
fungi,
genetic data analysis,
genomics,
graphics,
HMM,
human,
insect,
in situ hybridization,
interaction,
maximum likelihood,
microarray,
network,
NGS,
regulatory site,
sequence analysis,
sequencing,
transcription factor binding site,
transcription module,
transcription regulation,
transcription start site annotation,
transcriptome analysis,
vertebrate